A workflow to convert trapped ion mobility data to open formats

Citation

If you use TIMSCONVERT, please cite us:

Gordon T. Luu, Michael A. Freitas, Itzel Lizama-Chamu, Catherine S. McCaughey, Laura M. Sanchez, Mingxun Wang. (2022). TIMSCONVERT: A workflow to convert trapped ion mobility data to open formats. Bioinformatics; btac419. doi: 10.1093/bioinformatics/btac419.

Contents

Contents:

• Introduction
  • About TIMSCONVERT
  • timsTOF File Formats
  • Dimensionality of timsTOF Data
  • Example Acquisition Modes for File Conversion
  • Downstream Data Analysis
• Installation
  • TIMSCONVERT GUI
  • Manual Installation
  • Manual Installation on Windows
  • Manual Installation on Linux
• Local Usage
  • GUI Usage
  • Command Line Usage
  • Parameters
  • Testing
• Advanced Usage
  • Docker Container Installation and Usage
  • Nextflow Installation and Usage
• TIMSCONVERT Source Code
  • Submodules
  • timsconvert.arguments module
  • timsconvert.classes module
  • timsconvert.constants module
  • timsconvert.convert module
  • timsconvert.data_input module
  • timsconvert.parse module
  • timsconvert.timestamp module
  • timsconvert.timsconvert_gui_template module
  • timsconvert.write module
  • Module contents
• Modules
  • timsconvert package

Indices and Tables

• Index

• Module Index

• Search Page